Welcome to Song Lab

Database

CGDB : http://cgdb.bio2db.com/

Overview

Coriander (Coriandrum sativum L. 2n = 2x = 22), a plant from the Apiaceae family, also called cilantro or Chinese parsley, is a globally important crop used as vegetable, spice, fragrance, and traditional medicine. Here, we report a high-quality as

Statics

Table 1. Statistics on sequencing of the coriander genome.

Paired-end libraries	Insert size(Bp)	Total data (Gb)	Read length (Bp)	Coverage (X)
Illumina reads	350	139.87	150	65.66
Pacbio reads	-	197.45	-	92.69
10X Genomics	-	240.56	150	112.92
Total	-	577.88	-	271.27

Table 2. Summary of Hi-C auxiliary assembly of the Coriander genome.

Sample ID	Length		Number
	Contig**(bp)	Scaffold (bp)	Contig**	Scaffold
Total	2,118,309,730	139.8	9,936	6186
Max	3,580,399	184,508,978	-	-
Number	604,128	160,995,510	1,031	7
N50	604,128	160,995,510	1,031	7
N60	464,580	156,618,565	1,432	8
N70	345,039	149,113,063	1,957	9
N80	233,760	132,297,589	2,696	11
N90	115,576	176,899	3,961	238

**Assembled scaffolds > 100bp.

Publications

1.  Song X^#, Wang J^#, Li N, Yu J, Meng F, Wei C, Liu C, Chen W, Nie F, Zhang Z, Gong K, Li X, Hu J, Yang Q, Li Y, Li C, Feng S, Guo H, Yuan J, Pei Q, Yu T, Kang X, Zhao W, Lei T, Sun P, Wang L, Ge W, Guo D, Duan X, Shen S, Cui C, Yu Y, Xie Y, Zhang J, Hou Y, Wang J, Wang J, Li X Q, Paterson A H, Wang X^*. (2020) Deciphering the high-quality genome sequence of coriander that causes controversial feelings. Plant biotechnology journal, 18(6): 1444-1456.

2.  Song X^#, Nie F^#, Chen W^#, Ma X, Gong K, Yang Q, Wang J, Li N, Sun P, Pei Q, Yu T, Hu J, Li X, Wu T, Feng S, Li X Q, Wang X^*. (2020)Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander. Hortic Res, 7: 55.